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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015886024.1_cds_XP_016440144.1_35628
CDS Infomation

[gene=LOC107765958] [db_xref=GeneID:107765958] [protein=probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2] [protein_id=XP_016440144.1] [location=join(34174..34373,37251..37343,37461..37565,37728..37945,38113..38165,38301..38417,39105..39196,40993..41079,41604..41818,41930..42022,42296..42419,43235..43382,43548..43617,43853..43976,44255..44276)] [gbkey=CDS]
Sequence

ATGGCCGATTTACCTATAGTTCGATTTGAGGAGAAAATCATAGAAACAGTGGAGAAAAAC
CCTGTAGTGGTAGTCATTGGTGAGACCGGTTCTGGTAAAAGTACACAACTTTCACAAATG
CTTTATAAAAGAGGGTATGCTAAATCTGGAATGATCGCTGTTACTCAGCCTCGCCGTGTT
GCTGCAGTTTCTGTTTCTAGACGAGTTGCACAGGAGCAAAATGTTCGACTTGGAGAGGAA
GTCGGTTATGCCATAAGATTCGAAGATAGAACTTCGGAGAAAACACATATCAAATATCTT
ACGGATGGAGTGCTCCTCCGCGAGAGTCTTTTTAATCCGGAGCTGAATCAATATTCCGTC
ATCATATTGGATGAAGCACATGAGAGGAGTTTGAACACGGATATATTGCTTGGTTTAATG
AAAAGATTAATCAAATGGCGTCACTCAAACTTGAAAGTTTTGATCACATCAGCCACTCTT
GATGGTGGAAAGGTATCTAGGTTCTTCTCCGACTGTCCCGTCCTTACCGTACCAGGCGAG
TTATTTCCCGTGGAAATAGTACACATCTCAGAGCGCCCTAAAAACTATGTGGAGGCTTCT
CTAAAAACAGCTATTGATATTCACGTACGGGAGCCAGAAGGGGACATTTTAATATTTTTG
ACAGGGCAGGATGACATAGAGAAGTTGGTAATGAAGTTGGAGAAGAAAATTCAAAGCTTA
GATGAAGGTTCTTGTCTGGATGCCTTAATCCTTCCTCTTCATGGATCCTTGCCACCCGAG
ATGCAGGTGCGTGTTTTCAGTCCTCCACCTCCAAATTGTAGGCGGTTTATTGTTTCTACA
AATATTGCTGAAACGTCTTTGACTGTTGATGGTGTCGTGTATGTCATTGACTCGGGGTAT
GTGAAGCAACGGCAATATAACCCATCAACTGGCATGTACTCTTTGGAGGTTGTTCAGATT
AGCAAGGTGCAGGCAAAGCAGCGTGCAGGACGTGCTGGAAGGACACGTCCTGGAAAGTGT
TATCGTTTATATCCCTCTATGGTTTACCATGATGATTTTTTGGATGCCACCGTTCCTGAA
ATACAAAGGTCCTCATTGGCTGGAACTGTACTTTATTTGAAGTCGTTAGATCTCGCCGAT
ATGGATATTCTCAAATTTGATTTTCTCGACTCTCCTTCCATCGAGTCTTTAGAGGATGCC
TTGAAGCAATTATATTTAGTCGATGCAATTGATGAAAATGGTTCAATCACAAGCCTTGGA
CGAAAGATGGCTGAGCTTCCACTGGAACCTTCTCTTTCCAGGACCTTACTAGAGGCAAAT
GAGTTGGATTGCTTGTCCCAAGCATTGACAGTTGTTTCCATGTTGTCTGCTGAGACCACG
CTGCTTCCTGCCCCAAGTAAGATCTCTGAGAAGAAGAGGAAGCACACTCCTTCGAACCTT
CCTGATGGTGCTGGCTTGGGTGATCACATCCAGCTACTCCAAATTTATGAGCAATGGTAT
CAGACTGACTACAACATAGACTGGTGTAAAGAGAACAACTTACAGGTCCACGGGATGGTG
TTCGTGAGAGATGTCAGGAAACAGTTATCTCAAATAATGCAAAAAATTGCTAAAGGCTCA
TTAGATGTCCAAACAAGCAAAAGACGGAGAGACAGCCCACAGGAGTATAGAATATTGAGG
AAAGCATTGTGCATTGGTTACGCAAATCAGCTTGCTGAGCGGAGCATTCGACATAACGGG
TCCATCCATCTTCTGTGCTAA

Peptide Sequence

PEP ID

XP_016440144.1
PEP Infomation

PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2 [Nicotiana tabacum]
Sequence

MADLPIVRFEEKIIETVEKNPVVVVIGETGSGKSTQLSQMLYKRGYAKSGMIAVTQPRRV
AAVSVSRRVAQEQNVRLGEEVGYAIRFEDRTSEKTHIKYLTDGVLLRESLFNPELNQYSV
IILDEAHERSLNTDILLGLMKRLIKWRHSNLKVLITSATLDGGKVSRFFSDCPVLTVPGE
LFPVEIVHISERPKNYVEASLKTAIDIHVREPEGDILIFLTGQDDIEKLVMKLEKKIQSL
DEGSCLDALILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLEVVQISKVQAKQRAGRAGRTRPGKCYRLYPSMVYHDDFLDATVPE
IQRSSLAGTVLYLKSLDLADMDILKFDFLDSPSIESLEDALKQLYLVDAIDENGSITSLG
RKMAELPLEPSLSRTLLEANELDCLSQALTVVSMLSAETTLLPAPSKISEKKRKHTPSNL
PDGAGLGDHIQLLQIYEQWYQTDYNIDWCKENNLQVHGMVFVRDVRKQLSQIMQKIAKGS
LDVQTSKRRRDSPQEYRILRKALCIGYANQLAERSIRHNGSIHLLC

Transcript Sequence

Gene sequence data has not been registered.